Transcript: CACNA1G-AS1:2

Basic information

LNCipedia transcript ID: CACNA1G-AS1:2 
HGNC Gene Symbol: CACNA1G-AS1    
HGNC Full Gene Name: CACNA1G antisense RNA 1
Ensembl Gene ID: ENSG00000250107
Ensembl Transcript ID: ENST00000505495
Location (hg38): chr17:50556604-50559450
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1001 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000505495; ENST00000505495.1; RP11-94C24.10-002; OTTHUMT00000367677.1; NONHSAT054702
Alternative gene names: ENSG00000250107; RP11-94C24.10; ENSG00000250107.1; OTTHUMG00000162163.1; CACNA1G-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -172.999 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CACNA1G-AS1:2 no no no no

Available literature

  1. Sun (2017), Identification of skin-related lncRNAs as potential biomarkers that involved in Wnt pathways in keloids., Oncotarget
  2. Liang (2015), LncRNA expression profiles and validation in keloid and normal skin tissue., Int. J. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHAD-2:2
3.1 lnc-CHAD-4:2
4.0 CACNA1G-AS1:2
4.1 CACNA1G-AS1:2
5.0 CACNA1G-AS1:2
5.1 CACNA1G-AS1:2
5.2 CACNA1G-AS1:2