Transcript: DUBR:1

Basic information

LNCipedia transcript ID: DUBR:1 
LNCipedia gene ID: DUBR
Location (hg38): chr3:107240673-107253622
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 8030 bp
Exons: 2
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA966:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -17.3761 non-coding 
CPAT coding probability 7.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DUBR:1 no no no no

Available literature

  1. Wang (2015), LncRNA Dum interacts with Dnmts to regulate Dppa2 expression during myogenic differentiation and muscle regeneration., Cell Res.
  2. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 DUBR:1
4.1 DUBR:1
5.0 DUBR:1
5.1 DUBR:1
5.2 DUBR:1