Transcript: DUBR:12

Basic information

LNCipedia transcript ID: DUBR:12 
LNCipedia gene ID: DUBR
Location (hg38): chr3:107240731-107251905
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1019 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006924; NONHSAT091033
Alternative gene names: XLOC_002746; linc-CCDC54;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -191.9503 non-coding 
CPAT coding probability 1.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
DUBR:12 no no no no

Available literature

  1. Wang (2015), LncRNA Dum interacts with Dnmts to regulate Dppa2 expression during myogenic differentiation and muscle regeneration., Cell Res.
  2. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC54-2:10
3.1 lnc-CCDC54-2:9
4.0 DUBR:12
4.1 DUBR:12
5.0 DUBR:12
5.1 DUBR:12
5.2 DUBR:12