Transcript: DUBR:15

Basic information

LNCipedia transcript ID: DUBR:15 
LNCipedia gene ID: DUBR
Location (hg38): chr3:107248283-107251566
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 573 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006925; NONHSAT091036
Alternative gene names: XLOC_002746; linc-CCDC54;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.8439 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DUBR:15 no no no no

Available literature

  1. Wang (2015), LncRNA Dum interacts with Dnmts to regulate Dppa2 expression during myogenic differentiation and muscle regeneration., Cell Res.
  2. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC54-2:13
3.1 lnc-CCDC54-2:13
4.0 DUBR:15
4.1 DUBR:15
5.0 DUBR:15
5.1 DUBR:15
5.2 DUBR:15