Transcript: DUBR:16

Basic information

LNCipedia transcript ID: DUBR:16 
LNCipedia gene ID: DUBR
Location (hg38): chr3:107248941-107251453
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2513 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT091038
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.3945 non-coding 
CPAT coding probability 10.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DUBR:16 no no no no

Available literature

  1. Wang (2015), LncRNA Dum interacts with Dnmts to regulate Dppa2 expression during myogenic differentiation and muscle regeneration., Cell Res.
  2. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC54-5:1
4.0 DUBR:16
4.1 DUBR:16
5.0 DUBR:16
5.1 DUBR:16
5.2 DUBR:16