Transcript: DUBR:2

Basic information

LNCipedia transcript ID: DUBR:2 ?
HGNC Gene Symbol: DUBR    ?
HGNC Full Gene Name: DPPA2 upstream binding RNA
Location (hg19): chr3:106959539-106967195
Strand: +
Class: intergenic
Transcript size: 2737 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000466734; ENST00000466734.1; RP11-446H18.3-002; OTTHUMT00000353692.1; ENST00000466734.5
Alternative gene names: ENSG00000243701; RP11-446H18.3; ENSG00000243701.1; OTTHUMG00000159173.1; LINC00883; ENSG00000243701.5; DUBR;


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding ?
Peptide Confidence
GAAPKVADSPANRAMR 94%
Lee translation initiation sites 1 coding ?
Highest peak:20
PhyloCSF score -140.4859 non-coding ?
CPAT coding probability 0.28% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: no

Locus conservation

Locus conservation?
DUBR:2 no no

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -776.1
Randfold P-value: 0.002

Targetting miRNAs

MirTarget2 predictions:
MicroRNAMirTarget2 score ?
hsa-miR-5706 89.23
hsa-miR-4782-5p 87.33
hsa-miR-4760-3p 86.60
hsa-miR-4639-5p 83.76
hsa-miR-769-3p 78.84
hsa-miR-1205 77.42
hsa-miR-3188 76.65
hsa-miR-450b-5p 75.88
hsa-miR-4446-5p 73.94
hsa-miR-5572 72.58
hsa-miR-450b-3p 71.76
hsa-miR-4424 70.89
hsa-miR-4314 68.66
hsa-miR-29b-1-5p 67.99
hsa-miR-2355-3p 67.85
hsa-miR-498 67.80
hsa-miR-4755-5p 67.01
hsa-miR-4522 66.27
hsa-miR-5006-3p 66.01
hsa-miR-4280 65.76
hsa-miR-34c-3p 65.27
hsa-miR-323b-5p 64.53
hsa-miR-129-5p 63.91
hsa-miR-5700 62.80
hsa-miR-150-3p 61.88
hsa-miR-194-3p 61.65
hsa-miR-1290 61.56
hsa-miR-4445-5p 60.01
hsa-miR-3124-3p 59.99
hsa-miR-335-3p 59.99
hsa-miR-4324 58.94
hsa-miR-1299 58.32
hsa-miR-668 57.33
hsa-miR-1304-5p 56.09
hsa-miR-3194-3p 55.10
hsa-miR-142-3p 54.96
hsa-miR-4797-3p 54.70
hsa-miR-5697 54.44
hsa-miR-340-5p 54.14
hsa-miR-204-3p 53.85
hsa-miR-4472 53.72
hsa-miR-664-3p 52.11
hsa-miR-5692a 51.71
hsa-miR-376c 51.61
hsa-miR-580 51.19
hsa-miR-1200 51.12
hsa-miR-2278 50.00

Available literature

  1. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respiratory research


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
1.3 lnc-CCDC54-2:1
3.1 lnc-CCDC54-2:4