Transcript: DUBR:4

Basic information

LNCipedia transcript ID: DUBR:4 
HGNC Gene Symbol: DUBR    
HGNC Full Gene Name: DPPA2 upstream binding RNA
Ensembl Gene ID: ENSG00000243701
Ensembl Transcript ID: ENST00000490441
RefSeq ID: NR_028302
Location (hg38): chr3:107240692-107326964
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1149 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000490441; ENST00000490441.1; RP11-446H18.3-001; OTTHUMT00000353691.1; NONHSAT091027; NR_028302; NR_028302.1
Alternative gene names: ENSG00000243701; RP11-446H18.3; ENSG00000243701.1; OTTHUMG00000159173.1; LINC00883; ENSG00000243701.5; DUBR;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 7.4551 non-coding 
CPAT coding probability 3.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
DUBR:4 no no no no

Available literature

  1. Wang (2015), LncRNA Dum interacts with Dnmts to regulate Dppa2 expression during myogenic differentiation and muscle regeneration., Cell Res.
  2. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC54-2:3
3.1 lnc-CCDC54-2:3
4.0 DUBR:4
4.1 DUBR:4
5.0 DUBR:4
5.1 DUBR:4
5.2 DUBR:4