Transcript: DUBR:5

Basic information

LNCipedia transcript ID: DUBR:5 
LNCipedia gene ID: DUBR
Location (hg38): chr3:107240692-107326963
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1148 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00005384
Alternative gene names: XLOC_002746; linc-CCDC54;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 7.4551 non-coding 
CPAT coding probability 3.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
DUBR:5 no no no no

Available literature

  1. Wang (2015), LncRNA Dum interacts with Dnmts to regulate Dppa2 expression during myogenic differentiation and muscle regeneration., Cell Res.
  2. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC54-2:4
3.1 lnc-CCDC54-2:1
4.0 DUBR:5
4.1 DUBR:5
5.0 DUBR:5
5.1 DUBR:5
5.2 DUBR:5