Transcript: LIFR-AS1:6

Basic information

LNCipedia transcript ID: LIFR-AS1:6 
HGNC Gene Symbol: LIFR-AS1    
HGNC Full Gene Name: LIFR antisense RNA 1
Ensembl Gene ID: ENSG00000244968
Ensembl Transcript ID: ENST00000514291
Location (hg38): chr5:38558942-38579594
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 685 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000514291; ENST00000514291.1; LIFR-AS1-003; OTTHUMT00000367343.1; NONHSAT101100
Alternative gene names: ENSG00000244968; CTD-2196P11.1; ENSG00000244968.2; LIFR-AS1; OTTHUMG00000162109.1; ENSG00000244968.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -162.423 non-coding 
CPAT coding probability 2.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LIFR-AS1:6 no no no no

Available literature

  1. Liu (2018), Functional role of a long non-coding RNA LIFR-AS1/miR-29a/TNFAIP3 axis in colorectal cancer resistance to pohotodynamic therapy., Biochim. Biophys. Acta
  2. Wang (2016), Identifying the crosstalk of dysfunctional pathways mediated by lncRNAs in breast cancer subtypes., Mol Biosyst


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EGFLAM-2:3
3.1 lnc-EGFLAM-2:3
4.0 LIFR-AS1:6
4.1 LIFR-AS1:6
5.0 LIFR-AS1:6
5.1 LIFR-AS1:6
5.2 LIFR-AS1:6