Transcript: LINC00200:1

Basic information

LNCipedia transcript ID: LINC00200:1 
HGNC Gene Symbol: LINC00200    
HGNC Full Gene Name: long intergenic non-protein coding RNA 200
Ensembl Gene ID: ENSG00000229205
Ensembl Transcript ID: ENST00000425630
RefSeq ID: NR_015376
Location (hg38): chr10:1159768-1164672
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2434 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000425630; TCONS_00017666; ENST00000425630.1; LINC00200-001; OTTHUMT00000046417.2; NONHSAT010909; NR_015376; NR_015376.2
Alternative gene names: ENSG00000229205; XLOC_008338; linc-PFKP-7; NCRNA00200; ENSG00000229205.2; LINC00200; OTTHUMG00000017539.3; FLJ40354


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.6411 non-coding 
CPAT coding probability 6.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00200:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WDR37-1:1
3.1 lnc-WDR37-1:1
4.0 LINC00200:1
4.1 LINC00200:1
5.0 LINC00200:1
5.1 LINC00200:1
5.2 LINC00200:1