Transcript: LINC00922:3

Basic information

LNCipedia transcript ID: LINC00922:3 ?
HGNC Gene Symbol: LINC00922    ?
HGNC Full Gene Name: long intergenic non-protein coding RNA 922
Location (hg19): chr16:65318927-65605692
Strand: -
Class: intergenic
Transcript size: 1243 bp
Exons: 10
Sources: Biogazelle lncRNA chip; Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000502378; TCONS_00024303; ENST00000564041.1; RP11-256I9.1-003; OTTHUMT00000420602.1; NONHSAT142981; ENST00000564041.5
Alternative gene names: ENSG00000250685; XLOC_011977; linc-CDH11-7; ENSG00000261742.1; RP11-256I9.1; OTTHUMG00000172812.2; LINC00922; ENSG00000261742.5;


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score -20.3097 non-coding ?
CPAT coding probability 2.65% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
LINC00922:3 no yes

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -386.91
Randfold P-value: 0.048

Targetting miRNAs

MirTarget2 predictions:
MicroRNAMirTarget2 score ?
hsa-miR-642b-3p 77.21
hsa-miR-642a-3p 77.16
hsa-miR-361-3p 75.03
hsa-miR-1257 71.27
hsa-miR-3190-5p 70.97
hsa-miR-586 66.61
hsa-miR-3972 64.15
hsa-miR-1202 63.08
hsa-miR-3134 62.40
hsa-miR-433 62.33
hsa-miR-5002-3p 61.04
hsa-miR-4253 60.89
hsa-miR-4674 60.39
hsa-miR-204-3p 56.40
hsa-miR-544a 52.77
hsa-miR-5700 52.18
hsa-miR-1299 51.64
hsa-miR-5002-5p 50.51

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
1.3 lnc-CDH11-2:3
3.1 lnc-CDH11-3:4