Transcript: LINC00923:10

Basic information

LNCipedia transcript ID: LINC00923:10 ?
HGNC Gene Symbol: LINC00923    ?
HGNC Full Gene Name: long intergenic non-protein coding RNA 923
Location (hg19): chr15:98208535-98213519
Strand: -
Class: intergenic
Transcript size: 465 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023823; NONHSAT050743
Alternative gene names: XLOC_011602; linc-RGMA-5;


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score -56.3352 non-coding ?
CPAT coding probability 0.52% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
LINC00923:10 no no

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -117.62
Randfold P-value: 0.021

Targetting miRNAs

No microRNA targets found with MirTarget2

Available literature

  1. Parsa (2016), Genome-Wide Association of CKD Progression: The Chronic Renal Insufficiency Cohort Study., Journal of the American Society of Nephrology : JASN


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
1.3 lnc-RP11-82I10.1.1-2:1
3.1 lnc-RP11-82I10.1.1-2:1