Transcript: MIR3663HG:2

Basic information

LNCipedia transcript ID: MIR3663HG:2 
LNCipedia gene ID: MIR3663HG
RefSeq ID: NR_121650
Location (hg38): chr10:117158656-117169055
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2381 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000419373; TCONS_00018052; ENST00000419373.1; RP11-501J20.2-001; OTTHUMT00000050558.1; NR_121650; NR_121650.1
Alternative gene names: ENSG00000234474; XLOC_008959; linc-VAX1-2; RP11-501J20.2; ENSG00000234474.1; OTTHUMG00000019116.1; ; MIR3663HG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.4724 non-coding 
CPAT coding probability 3.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR3663HG:2 no no no no

Available literature

  1. Ma (2015), Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes., Nat. Methods


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VAX1-1:1
3.1 lnc-VAX1-1:1
4.0 MIR3663HG:2
4.1 MIR3663HG:2
5.0 MIR3663HG:2
5.1 MIR3663HG:2
5.2 MIR3663HG:2