Transcript: NNT-AS1:2

Basic information

LNCipedia transcript ID: NNT-AS1:2 
LNCipedia gene ID: NNT-AS1
RefSeq ID: NR_073113
Location (hg38): chr5:43573185-43603230
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3304 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT101321; NR_073113; NR_073113.1
Alternative gene names: ; NNT-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 2 non-coding 
PhyloCSF score 14.5768 non-coding 
CPAT coding probability 6.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
NNT-AS1:2 no no no no

Available literature

  1. Hua (2017), Highly expressed long non-coding RNA NNT-AS1 promotes cell proliferation and invasion through Wnt/β-catenin signaling pathway in cervical cancer., Biomed. Pharmacother.
  2. Wang (2017), Upregulated NNT-AS1, a long noncoding RNA, contributes to proliferation and migration of colorectal cancer cells in vitro and in vivo., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAIP1-1:6
4.0 NNT-AS1:2
4.1 NNT-AS1:2
5.0 NNT-AS1:2
5.1 NNT-AS1:2
5.2 NNT-AS1:2