Transcript: PCED1B-AS1:4

Basic information

LNCipedia transcript ID: PCED1B-AS1:4 
HGNC Gene Symbol: PCED1B-AS1    
HGNC Full Gene Name: PCED1B antisense RNA 1
Ensembl Gene ID: ENSG00000247774
Ensembl Transcript ID: ENST00000500365
Location (hg38): chr12:47208420-47216435
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2494 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000500365; ENST00000500365.2; RP11-493L12.2-001; OTTHUMT00000405097.1
Alternative gene names: ENSG00000247774; RP11-493L12.2; ENSG00000247774.2; OTTHUMG00000169619.1; PCED1B-AS1; ENSG00000247774.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.5941 non-coding 
CPAT coding probability 2.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCED1B-AS1:4 no no no no

Available literature

  1. Gu (2015), Aberrant expression of long noncoding RNAs in chronic thromboembolic pulmonary hypertension., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AMIGO2-1:3
3.1 lnc-AMIGO2-1:3
4.0 PCED1B-AS1:4
4.1 PCED1B-AS1:4
5.0 PCED1B-AS1:4
5.1 PCED1B-AS1:4
5.2 PCED1B-AS1:4