Transcript: PIK3CD-AS2:1

Basic information

LNCipedia transcript ID: PIK3CD-AS2:1 ?
HGNC Gene Symbol: PIK3CD-AS2    ?
HGNC Full Gene Name: PIK3CD antisense RNA 2
Location (hg19): chr1:9739858-9747632
Strand: -
Class: antisense
Transcript size: 983 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000415330; ENST00000415330.1; RP11-558F24.4-001; OTTHUMT00000004234.1; NONHSAT000816
Alternative gene names: ENSG00000231789; RP11-558F24.4; ENSG00000231789.1; OTTHUMG00000001449.1;


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score -18.4754 non-coding ?
CPAT coding probability 1.38% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
PIK3CD-AS2:1 no no

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -371.5
Randfold P-value: 0.001

Targetting miRNAs

MirTarget2 predictions:
MicroRNAMirTarget2 score ?
hsa-miR-4435 76.41
hsa-miR-1273f 72.63
hsa-miR-4534 69.63
hsa-miR-5095 60.48
hsa-miR-4417 58.65
hsa-miR-1237 57.24
hsa-miR-3182 56.56
hsa-miR-877-3p 52.44
hsa-miR-299-3p 50.00
hsa-miR-3924 50.00

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
1.3 lnc-C1orf200-1:1
3.1 lnc-C1orf200-1:1