Transcript: SNHG12:9

Basic information

LNCipedia transcript ID: SNHG12:9 
HGNC Gene Symbol: SNHG12    
HGNC Full Gene Name: small nucleolar RNA host gene 12
Ensembl Gene ID: ENSG00000197989
Ensembl Transcript ID: ENST00000464115
Location (hg38): chr1:28580335-28581853
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 712 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000464115; ENST00000464115.1; SNHG12-009; OTTHUMT00000010364.1; NONHSAT001981
Alternative gene names: ENSG00000197989; SNHG12; ENSG00000197989.8; OTTHUMG00000003654.2; ENSG00000197989.9; ENSG00000197989.13; PNAS-123; LINC00100; ASLNC04080


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -105.7518 non-coding 
CPAT coding probability 8.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SNHG12:9 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science
  2. Ruan (2016), Long non-coding RNA small nucleolar RNA host gene 12 (SNHG12) promotes cell proliferation and migration by upregulating angiomotin gene expression in human osteosarcoma cells., Tumour Biol.
  3. Zhai (2015), Microarray expression profile of lncRNAs and the upregulated ASLNC04080 lncRNA in human endometrial carcinoma., Int. J. Oncol.
  4. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TAF12-1:6
3.1 lnc-TAF12-1:6
4.0 SNHG12:9
4.1 SNHG12:9
5.0 SNHG12:9
5.1 SNHG12:9
5.2 SNHG12:9