Transcript: lnc-FAM72C-2:1

Basic information

LNCipedia transcript ID: lnc-FAM72C-2:1 ?
LNCipedia gene ID: lnc-FAM72C-2
Location (hg19): chr1:149590752-149591762
Strand: -
Class: undefined
Transcript size: 398 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00000639; ENST00000428508; ENST00000428508.1; RP11-353N4.1-001; OTTHUMT00000039132.1; NONHSAT006228
Alternative gene names: XLOC_001011; linc-HIST2H2BF-2; ENSG00000229801; RP11-353N4.1; ENSG00000229801.1; OTTHUMG00000013950.1


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score -26.275 non-coding ?
CPAT coding probability 1.09% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM72C-2:1 no no

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -79.4
Randfold P-value: 0.141

Targetting miRNAs

MirTarget2 predictions:
MicroRNAMirTarget2 score ?
hsa-miR-338-3p 64.70
hsa-miR-4772-5p 57.85
hsa-miR-4649-3p 57.67
hsa-miR-4310 56.84
hsa-miR-4699-5p 55.61
hsa-miR-4273 52.68
hsa-miR-1225-5p 50.00
hsa-miR-328 50.00

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
1.3 lnc-FAM72C-2:1
3.1 lnc-FAM72C-2:1