Transcript: lnc-HES5-1:2

Basic information

LNCipedia transcript ID: lnc-HES5-1:2 ?
LNCipedia gene ID: lnc-HES5-1
Location (hg19): chr1:2481359-2488450
Strand: -
Class: antisense
Transcript size: 3522 bp
Exons: 6
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000416860; ENST00000416860.2; RP3-395M20.8-001; OTTHUMT00000002185.2; NONHSAT000448
Alternative gene names: ENSG00000238164; RP3-395M20.8; ENSG00000238164.2; OTTHUMG00000000818.3; ENSG00000238164.6


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score 13.898 non-coding ?
CPAT coding probability 56.76% coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: no

Locus conservation

Locus conservation?
lnc-HES5-1:2 yes no

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -1659.23
Randfold P-value: 0.001

Targetting miRNAs

MirTarget2 predictions:
MicroRNAMirTarget2 score ?
hsa-miR-3692-5p 91.51
hsa-miR-1915-3p 86.17
hsa-miR-130b-5p 85.64
hsa-miR-92a-2-5p 85.36
hsa-miR-4753-3p 84.06
hsa-miR-4456 81.96
hsa-miR-296-5p 74.70
hsa-miR-4793-5p 72.97
hsa-miR-4472 70.90
hsa-miR-143-5p 70.68
hsa-miR-1200 69.32
hsa-miR-4447 69.21
hsa-miR-4330 67.74
hsa-miR-3175 67.61
hsa-miR-532-3p 67.41
hsa-miR-3135b 65.32
hsa-miR-4649-3p 64.80
hsa-miR-4664-5p 63.64
hsa-miR-4685-5p 63.20
hsa-miR-1976 63.16
hsa-miR-510 62.83
hsa-miR-3202 58.28
hsa-miR-922 56.48
hsa-miR-4722-3p 55.72
hsa-miR-5589-5p 55.68
hsa-miR-454-3p 55.33
hsa-miR-370 54.37
hsa-miR-3666 53.44
hsa-miR-4265 51.87
hsa-miR-4682 51.70
hsa-miR-130b-3p 51.15
hsa-miR-125b-5p 50.83

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
1.3 lnc-HES5-1:2
3.1 lnc-HES5-1:2