Transcript: lnc-HOMER2-2:2

Basic information

LNCipedia transcript ID: lnc-HOMER2-2:2 ?
LNCipedia gene ID: lnc-HOMER2-2
Location (hg19): chr15:83626882-83654620
Strand: -
Class: intronic
Transcript size: 1261 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000500334; TCONS_00023251; NONHSAT047876
Alternative gene names: ENSG00000245763; XLOC_011554; linc-HOMER2; AC022558.1


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score -74.9897 non-coding ?
CPAT coding probability 3.43% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOMER2-2:2 yes no

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -427.37
Randfold P-value: 0.006

Targetting miRNAs

MirTarget2 predictions:
MicroRNAMirTarget2 score ?
hsa-miR-24-3p 77.04
hsa-miR-3663-3p 74.42
hsa-miR-4270 71.75
hsa-miR-302a-5p 64.40
hsa-miR-4779 64.32
hsa-miR-4459 63.39
hsa-miR-5195-5p 61.86
hsa-miR-3612 60.62
hsa-miR-650 59.91
hsa-miR-454-5p 59.65
hsa-miR-4441 59.38
hsa-miR-578 58.53
hsa-miR-4529-3p 58.52
hsa-miR-298 58.16
hsa-miR-5703 57.78
hsa-miR-922 56.46
hsa-miR-4516 54.17
hsa-miR-4711-3p 53.79
hsa-miR-202-3p 53.66
hsa-miR-4649-3p 52.87
hsa-miR-4434 51.99
hsa-miR-4763-3p 51.80
hsa-miR-940 50.99

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
1.3 lnc-C15orf40-1:1
3.1 lnc-C15orf40-2:1