Transcript: lnc-IGHMBP2-1:1

Basic information

LNCipedia transcript ID: lnc-IGHMBP2-1:1 
LNCipedia gene ID: lnc-IGHMBP2-1
Ensembl Gene ID: ENSG00000250508
Ensembl Transcript ID: ENST00000512200
Location (hg38): chr11:68870664-68874542
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3252 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000512200; TCONS_00019150; ENST00000512200.1; RP11-757G1.6-001; OTTHUMT00000421713.1; NONHSAT022548
Alternative gene names: ENSG00000250508; XLOC_009186; linc-IGHMBP2; AP000808.1; ENSG00000250508.1; RP11-757G1.6; OTTHUMG00000173014.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.3653 non-coding 
CPAT coding probability 36.79% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-IGHMBP2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IGHMBP2-1:1
3.1 lnc-IGHMBP2-1:1
4.0 lnc-IGHMBP2-1:1
4.1 lnc-IGHMBP2-1:1
5.0 lnc-IGHMBP2-1:1
5.1 lnc-TCIRG1-17:4
5.2 lnc-IGHMBP2-1:1