Transcript: lnc-RNF227-2:2

Basic information

LNCipedia transcript ID: lnc-RNF227-2:2 
LNCipedia gene ID: lnc-RNF227-2
Location (hg38): chr17:7867821-7873713
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2846 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025133; NONHSAT145455
Alternative gene names: XLOC_012382; linc-LSMD1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.1788 non-coding 
CPAT coding probability 21.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNF227-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LSMD1-1:2
3.1 lnc-LSMD1-1:2
4.0 lnc-LSMD1-1:2
4.1 lnc-LSMD1-1:2
5.0 lnc-LSMD1-1:2
5.1 lnc-YBX2-25:2
5.2 lnc-RNF227-2:2