Transcript: lnc-SLC39A11-1:29

Basic information

LNCipedia transcript ID: lnc-SLC39A11-1:29 ?
LNCipedia gene ID: lnc-SLC39A11-1
Location (hg19): chr17:70320204-70335708
Strand: -
Class: intergenic
Transcript size: 657 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000581183.1; LINC00511-016; OTTHUMT00000441437.1; NONHSAT055676
Alternative gene names: ENSG00000227036.2; LINC00511; OTTHUMG00000132227.4; ENSG00000227036.6


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score -44.5909 non-coding ?
CPAT coding probability 0.71% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A11-1:29 yes no

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -197.2
Randfold P-value: 0.109

Targetting miRNAs

No microRNA targets found with MirTarget2

Available literature

  1. Schmidt (2016), The lncRNA SLNCR1 Mediates Melanoma Invasion through a Conserved SRA1-like Region., Cell reports


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
3.1 lnc-SLC39A11-1:29