Transcript: lnc-SLC39A11-1:6

Basic information

LNCipedia transcript ID: lnc-SLC39A11-1:6 ?
LNCipedia gene ID: lnc-SLC39A11-1
Location (hg19): chr17:70399463-70588943
Strand: -
Class: intergenic
Transcript size: 2257 bp
Exons: 4
Sources: Broad Institute; Refseq - Dec 2014
Alternative transcript names: TCONS_00025114; NR_036488
Alternative gene names: XLOC_012568; linc-ABCA5-3


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score non-coding ?
CPAT coding probability 18.40% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC39A11-1:6 yes no

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -844.81
Randfold P-value: 0.005

Targetting miRNAs

No microRNA targets found with MirTarget2

Available literature

  1. Schmidt (2016), The lncRNA SLNCR1 Mediates Melanoma Invasion through a Conserved SRA1-like Region., Cell reports


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
1.3 lnc-SLC39A11-2:3
3.1 lnc-SLC39A11-1:6