Transcript: lnc-TTLL7-2:5

Basic information

LNCipedia transcript ID: lnc-TTLL7-2:5 ?
LNCipedia gene ID: lnc-TTLL7-2
Location (hg19): chr1:84267199-84326229
Strand: -
Class: intergenic
Transcript size: 1991 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000457273; ENST00000457273.1; RP11-475O6.1-005; OTTHUMT00000027496.1; NONHSAT004171; NR_119374; ENST00000457273.5
Alternative gene names: ENSG00000233008; RP11-475O6.1; ENSG00000233008.1; OTTHUMG00000009930.1; ENSG00000233008.5


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score -150.9339 non-coding ?
CPAT coding probability 6.45% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
lnc-TTLL7-2:5 yes yes

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -586.82
Randfold P-value: 0.004

Targetting miRNAs

MirTarget2 predictions:
MicroRNAMirTarget2 score ?
hsa-miR-645 71.11
hsa-miR-3148 67.96
hsa-miR-3129-3p 66.86
hsa-miR-107 66.55
hsa-miR-103a-3p 66.34
hsa-miR-3688-5p 66.32
hsa-miR-4731-5p 66.27
hsa-miR-655 66.08
hsa-miR-5583-5p 65.56
hsa-miR-186-5p 65.34
hsa-miR-3154 63.43
hsa-miR-374a-3p 62.50
hsa-miR-4677-5p 61.54
hsa-miR-374c-5p 60.04
hsa-miR-921 59.84
hsa-miR-5582-3p 59.44
hsa-miR-548o-3p 59.02
hsa-miR-3978 58.81
hsa-miR-4700-5p 58.72
hsa-miR-513a-5p 58.23
hsa-miR-3622b-5p 57.47
hsa-miR-5706 57.31
hsa-miR-4253 55.90
hsa-miR-93-3p 55.46
hsa-miR-4731-3p 55.09
hsa-miR-502-5p 54.87
hsa-miR-3140-5p 54.86
hsa-miR-4495 53.18
hsa-miR-501-5p 52.63
hsa-miR-1976 52.50
hsa-miR-1323 52.47
hsa-miR-4782-5p 52.47
hsa-miR-765 52.26
hsa-miR-4728-3p 52.02
hsa-miR-3119 51.50
hsa-miR-1253 50.70
hsa-miR-4801 50.57
hsa-miR-3185 50.00
hsa-miR-4276 50.00
hsa-miR-924 50.00

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
1.3 lnc-TTLL7-2:5
3.1 lnc-TTLL7-2:5