Transcript: lnc-UQCRHL-1:5

Basic information

LNCipedia transcript ID: lnc-UQCRHL-1:5 
LNCipedia gene ID: lnc-UQCRHL-1
Location (hg38): chr1:15834065-15835860
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1796 bp
Exons: 1
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000535249; ENST00000535249.1; RP11-169K16.9-201; NONHSAT001062
Alternative gene names: ENSG00000179743; RP11-169K16.9; ENSG00000179743.2; OTTHUMG00000009375.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -110.34 non-coding 
CPAT coding probability 55.03% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-UQCRHL-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZBTB17-1:2
3.1 lnc-ZBTB17-1:2
4.0 lnc-ZBTB17-1:2
4.1 lnc-ZBTB17-1:2
5.0 lnc-ZBTB17-1:2
5.1 lnc-LRRC38-26:5
5.2 lnc-UQCRHL-1:5