Transcript: FAM170B-AS1:5

Basic information

LNCipedia transcript ID: FAM170B-AS1:5 
HGNC Gene Symbol: FAM170B-AS1    
HGNC Full Gene Name: FAM170B antisense RNA 1
Ensembl Gene ID: ENSG00000234736
Ensembl Transcript ID: ENST00000435809
Location (hg38): chr10:49122086-49141330
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 474 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000435809.1; RP11-507P23.3-004; OTTHUMT00000047973.1; NONHSAT139976
Alternative gene names: ENSG00000234736.1; RP11-507P23.3; OTTHUMG00000018186.1; FAM170B-AS1; ENSG00000234736.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -300.9955 non-coding 
CPAT coding probability 1.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM170B-AS1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WDFY4-3:3
4.0 FAM170B-AS1:5
4.1 FAM170B-AS1:5
5.0 FAM170B-AS1:5
5.1 FAM170B-AS1:5
5.2 FAM170B-AS1:5