Transcript: LINC00886:4

Basic information

LNCipedia transcript ID: LINC00886:4 
HGNC Gene Symbol: LINC00886    
HGNC Full Gene Name: long intergenic non-protein coding RNA 886
Ensembl Gene ID: ENSG00000240875
Ensembl Transcript ID: ENST00000472943
Location (hg38): chr3:156747346-156817034
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3306 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000472943; ENST00000472943.1; RP11-392A22.2-001; OTTHUMT00000351622.1; ENST00000472943.5
Alternative gene names: ENSG00000240875; RP11-392A22.2; ENSG00000240875.1; OTTHUMG00000158647.1; LINC00886; ENSG00000240875.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.4073 non-coding 
CPAT coding probability 1.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00886:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SSR3-1:2
3.1 lnc-SSR3-3:2
4.0 LINC00886:4
4.1 LINC00886:4
5.0 LINC00886:4
5.1 LINC00886:4
5.2 LINC00886:4