Transcript: LINC01220:3

Basic information

LNCipedia transcript ID: LINC01220:3 
HGNC Gene Symbol: LINC01220    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1220
Ensembl Gene ID: ENSG00000259687
Ensembl Transcript ID: ENST00000558575
Location (hg38): chr14:75294407-75296638
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 715 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558575.1; RP11-293M10.5-001; OTTHUMT00000415498.1; NONHSAT037853
Alternative gene names: ENSG00000259687.1; RP11-293M10.5; OTTHUMG00000171867.1; LINC01220;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.1857 non-coding 
CPAT coding probability 7.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01220:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOS-2:2
4.0 LINC01220:3
4.1 LINC01220:3
5.0 LINC01220:3
5.1 LINC01220:3
5.2 LINC01220:3