Transcript: LINC01725:19

Basic information

LNCipedia transcript ID: LINC01725:19 ?
HGNC Gene Symbol: LINC01725    ?
HGNC Full Gene Name: long intergenic non-protein coding RNA 1725
Location (hg38): chr1:83801516-83860546
Strand: -
Class: intergenic
Transcript size: 1991 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000457273; ENST00000457273.1; RP11-475O6.1-005; OTTHUMT00000027496.1; NONHSAT004171; NR_119374; ENST00000457273.5; NR_119374.1
Alternative gene names: ENSG00000233008; RP11-475O6.1; ENSG00000233008.1; OTTHUMG00000009930.1; ENSG00000233008.5; LINC01725; LOC101927560


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score -150.9339 non-coding ?
CPAT coding probability 6.45% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
LINC01725:19 yes yes

Available literature

No linked literature available at this time.


Other resources

LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
1.3 lnc-TTLL7-2:5
4.1 lnc-TTLL7-2:5
4.0 lnc-TTLL7-2:5
3.1 lnc-TTLL7-2:5