Transcript: LINC01806:16

Basic information

LNCipedia transcript ID: LINC01806:16 
LNCipedia gene ID: LINC01806
Location (hg38): chr2:161244739-161248730
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2013 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00002724
Alternative gene names: XLOC_001728; linc-PSMD14


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.6643 non-coding 
CPAT coding probability 0.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01806:16 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TANK-1:1
3.1 lnc-TANK-1:1
4.0 lnc-TANK-1:1
4.1 lnc-TANK-1:1
5.0 lnc-TANK-1:1
5.1 LINC01806:3
5.2 LINC01806:16