Transcript: LINC01806:17

Basic information

LNCipedia transcript ID: LINC01806:17 
HGNC Gene Symbol: LINC01806    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1806
Ensembl Gene ID: ENSG00000227403
Ensembl Transcript ID: ENST00000439050
RefSeq ID: NR_110164
Location (hg38): chr2:161244739-161249050
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2333 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000439050; ENST00000439050.1; AC009299.3-001; OTTHUMT00000324253.1; NONHSAT075169; NR_110164; NR_110164.1
Alternative gene names: ENSG00000227403; AC009299.3; ENSG00000227403.1; OTTHUMG00000151885.1; LINC01806; LOC100996579


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.6643 non-coding 
CPAT coding probability 0.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01806:17 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TANK-1:2
3.1 lnc-TANK-1:2
4.0 lnc-TANK-1:2
4.1 lnc-TANK-1:2
5.0 lnc-TANK-1:2
5.1 LINC01806:4
5.2 LINC01806:17