Transcript: LINC01849:6

Basic information

LNCipedia transcript ID: LINC01849:6 
HGNC Gene Symbol: LINC01849    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1849
Ensembl Gene ID: ENSG00000234988
Ensembl Transcript ID: ENST00000414647
Location (hg38): chr2:100607028-100609351
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 517 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000414647; ENST00000414647.1; AC068538.4-001; OTTHUMT00000329774.1; NONHSAT072784
Alternative gene names: ENSG00000234988; AC068538.4; ENSG00000234988.1; OTTHUMG00000153149.1; LINC01849


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.991 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01849:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PDCL3-1:1
3.1 lnc-PDCL3-1:1
4.0 lnc-PDCL3-1:1
4.1 lnc-PDCL3-1:1
5.0 lnc-PDCL3-1:1
5.1 LINC01849:3
5.2 LINC01849:6