Transcript: LINC01880:20

Basic information

LNCipedia transcript ID: LINC01880:20 
HGNC Gene Symbol: LINC01880    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1880
Ensembl Gene ID: ENSG00000232002
Ensembl Transcript ID: ENST00000446593
Location (hg38): chr2:242047695-242084138
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 561 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003524; ENST00000446593; ENST00000446593.1; AC093642.6-001; OTTHUMT00000322442.1; NONHSAT078020
Alternative gene names: XLOC_002560; linc-PDCD1-4; ENSG00000232002; AC093642.6; ENSG00000232002.1; OTTHUMG00000151385.1; LINC01880


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.6679 non-coding 
CPAT coding probability 2.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01880:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC131097.4.1-3:6
3.1 lnc-AC131097.4.1-3:6
4.0 lnc-AC131097.4.1-3:6
4.1 lnc-AC131097.4.1-3:6
5.0 lnc-AC131097.4.1-3:6
5.1 LINC01880:10
5.2 LINC01880:20