Transcript: LINC02029:13

Basic information

LNCipedia transcript ID: LINC02029:13 
HGNC Gene Symbol: LINC02029    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2029
Ensembl Gene ID: ENSG00000241544
Ensembl Transcript ID: ENST00000469196
RefSeq ID: NR_135546
Location (hg38): chr3:157081841-157088547
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1497 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000469196; TCONS_00005633; ENST00000469196.1; RP11-6F2.5-001; OTTHUMT00000351883.1; NONHSAT092879; NR_135546.1
Alternative gene names: ENSG00000241544; XLOC_002891; linc-PTX3-5; RP11-6F2.5; ENSG00000241544.1; OTTHUMG00000158714.1; LINC02029; LOC105374177


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -122.2968 non-coding 
CPAT coding probability 2.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02029:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LEKR1-1:1
3.1 lnc-LEKR1-1:1
4.0 lnc-LEKR1-1:1
4.1 lnc-LEKR1-1:1
5.0 lnc-LEKR1-1:1
5.1 LINC02029:6
5.2 LINC02029:13