Transcript: LINC02079:3

Basic information

LNCipedia transcript ID: LINC02079:3 
HGNC Gene Symbol: LINC02079    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2079
Ensembl Gene ID: ENSG00000266013
Ensembl Transcript ID: ENST00000582518
RefSeq ID: NR_135645
Location (hg38): chr17:39026715-39027110
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 294 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000582518.1; CTD-2206N4.2-001; OTTHUMT00000444097.1; NONHSAT053395; NR_135645.1
Alternative gene names: ENSG00000266013.1; CTD-2206N4.2; OTTHUMG00000178953.1; LINC02079; LOC105371766


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -218.5564 non-coding 
CPAT coding probability 0.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02079:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PLXDC1-1:1
4.0 lnc-PLXDC1-1:1
4.1 lnc-PLXDC1-1:1
5.0 lnc-PLXDC1-1:1
5.1 LINC02079:2
5.2 LINC02079:3