Transcript: LINC02086:17

Basic information

LNCipedia transcript ID: LINC02086:17 
HGNC Gene Symbol: LINC02086    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2086
Ensembl Gene ID: ENSG00000244649
Ensembl Transcript ID: ENST00000492522
Location (hg38): chr17:48683367-48706330
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2091 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000492522.3
Alternative gene names: ENSG00000244649.4; CTD-2377D24.6; LINC02086


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -12.6188 non-coding 
CPAT coding probability 1.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02086:17 no no no no

Available literature

  1. Xiong (2015), Microarray Analysis of Long Non-coding RNA Expression Profile Associated with 5-Fluorouracil-Based Chemoradiation Resistance in Colorectal Cancer Cells., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CALCOCO2-3:9
4.1 lnc-CALCOCO2-3:9
5.0 lnc-CALCOCO2-3:9
5.1 LINC02086:7
5.2 LINC02086:17