Transcript: LINC02086:20

Basic information

LNCipedia transcript ID: LINC02086:20 
HGNC Gene Symbol: LINC02086    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2086
Ensembl Gene ID: ENSG00000244649
Ensembl Transcript ID: ENST00000478824
Location (hg38): chr17:48705203-48707346
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1436 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00025175; ENST00000478824; ENST00000478824.1; CTD-2377D24.6-001; OTTHUMT00000358095.1; NONHSAT054468
Alternative gene names: XLOC_012227; linc-CALCOCO2-2; ENSG00000244649; CTD-2377D24.6; ENSG00000244649.1; OTTHUMG00000159905.1; ENSG00000244649.2; ENSG00000244649.4; LINC02086


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.8693 non-coding 
CPAT coding probability 1.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02086:20 no no no no

Available literature

  1. Xiong (2015), Microarray Analysis of Long Non-coding RNA Expression Profile Associated with 5-Fluorouracil-Based Chemoradiation Resistance in Colorectal Cancer Cells., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CALCOCO2-1:1
3.1 lnc-CALCOCO2-3:1
4.0 lnc-CALCOCO2-3:1
4.1 lnc-CALCOCO2-3:1
5.0 lnc-CALCOCO2-3:1
5.1 LINC02086:10
5.2 LINC02086:20