Transcript: LINC02109:30

Basic information

LNCipedia transcript ID: LINC02109:30 
HGNC Gene Symbol: LINC02109    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2109
Ensembl Gene ID: ENSG00000259786
Ensembl Transcript ID: ENST00000602470
Location (hg38): chr5:29143503-29162458
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 559 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT100837; ENST00000602470.1; ENST00000602470.5
Alternative gene names: ENSG00000259786.2; CTD-2118P12.1; ENSG00000259786.6; LINC02109


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.7309 non-coding 
CPAT coding probability 6.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02109:30 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDH6-2:17
4.0 lnc-CDH6-2:17
4.1 lnc-CDH6-2:17
5.0 lnc-CDH6-2:17
5.1 LINC02109:2
5.2 LINC02109:30