Transcript: LINC02109:33

Basic information

LNCipedia transcript ID: LINC02109:33 
LNCipedia gene ID: LINC02109
Location (hg38): chr5:29143511-29153809
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 697 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010651; NONHSAT100840
Alternative gene names: XLOC_004325; linc-CDH6-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.6628 non-coding 
CPAT coding probability 5.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02109:33 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDH6-2:2
3.1 lnc-CDH6-2:2
4.0 lnc-CDH6-2:2
4.1 lnc-CDH6-2:2
5.0 lnc-CDH6-2:2
5.1 LINC02109:6
5.2 LINC02109:33