Transcript: LINC02189:11

Basic information

LNCipedia transcript ID: LINC02189:11 
LNCipedia gene ID: LINC02189
Location (hg38): chr16:86720601-86721995
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 827 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025089; NONHSAT144238
Alternative gene names: XLOC_012048; linc-MTHFSD-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.5988 non-coding 
CPAT coding probability 1.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02189:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MTHFSD-3:2
3.1 lnc-MTHFSD-5:2
4.0 lnc-MTHFSD-5:2
4.1 lnc-MTHFSD-5:2
5.0 lnc-MTHFSD-5:2
5.1 LINC02189:3
5.2 LINC02189:11