Transcript: LINC02446:5

Basic information

LNCipedia transcript ID: LINC02446:5 
HGNC Gene Symbol: LINC02446    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2446
Ensembl Gene ID: ENSG00000256039
Ensembl Transcript ID: ENST00000544591
Location (hg38): chr12:10553363-10558049
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 868 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000544591; ENST00000544591.1; RP11-291B21.2-001; OTTHUMT00000401139.1
Alternative gene names: ENSG00000256039; RP11-291B21.2; ENSG00000256039.1; OTTHUMG00000168797.1; LINC02446


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -141.235 non-coding 
CPAT coding probability 1.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02446:5 no no no no

Available literature

  1. Xiong (2015), Microarray Analysis of Long Non-coding RNA Expression Profile Associated with 5-Fluorouracil-Based Chemoradiation Resistance in Colorectal Cancer Cells., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EIF2S3L.1-1:1
3.1 lnc-EIF2S3L.1-1:1
4.0 lnc-EIF2S3L.1-1:1
4.1 lnc-EIF2S3L.1-1:1
5.0 lnc-EIF2S3L.1-1:1
5.1 LINC02446:2
5.2 LINC02446:5