Transcript: LINC02446:6

Basic information

LNCipedia transcript ID: LINC02446:6 
LNCipedia gene ID: LINC02446
Location (hg38): chr12:10553376-10559696
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2835 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT026886; FPKM1_group_5766_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.0195 non-coding 
CPAT coding probability 0.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02446:6 no no no no

Available literature

  1. Xiong (2015), Microarray Analysis of Long Non-coding RNA Expression Profile Associated with 5-Fluorouracil-Based Chemoradiation Resistance in Colorectal Cancer Cells., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EIF2S3L.1-1:3
4.0 lnc-EIF2S3L.1-1:3
4.1 lnc-EIF2S3L.1-1:3
5.0 lnc-EIF2S3L.1-1:3
5.1 LINC02446:3
5.2 LINC02446:6