Transcript: LINC02446:7

Basic information

LNCipedia transcript ID: LINC02446:7 
LNCipedia gene ID: LINC02446
Location (hg38): chr12:10553380-10558217
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1019 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021063; NONHSAT026887
Alternative gene names: XLOC_009661; linc-PRH2-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -127.7544 non-coding 
CPAT coding probability 1.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02446:7 no no no no

Available literature

  1. Xiong (2015), Microarray Analysis of Long Non-coding RNA Expression Profile Associated with 5-Fluorouracil-Based Chemoradiation Resistance in Colorectal Cancer Cells., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EIF2S3L.1-1:2
3.1 lnc-EIF2S3L.1-1:2
4.0 lnc-EIF2S3L.1-1:2
4.1 lnc-EIF2S3L.1-1:2
5.0 lnc-EIF2S3L.1-1:2
5.1 LINC02446:4
5.2 LINC02446:7