Transcript: RBPMS-AS1:2

Basic information

LNCipedia transcript ID: RBPMS-AS1:2 
HGNC Gene Symbol: RBPMS-AS1    
HGNC Full Gene Name: RBPMS antisense RNA 1
Ensembl Gene ID: ENSG00000254109
Ensembl Transcript ID: ENST00000519753
Location (hg38): chr8:30382124-30385293
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1031 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000519753.1; CTD-3107M8.4-002; OTTHUMT00000376455.1; NONHSAT125855
Alternative gene names: ENSG00000254109.1; CTD-3107M8.4; OTTHUMG00000163930.1; RBPMS-AS1; ENSG00000254109.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.3605 non-coding 
CPAT coding probability 30.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RBPMS-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GTF2E2-1:2
4.0 RBPMS-AS1:2
4.1 RBPMS-AS1:2
5.0 RBPMS-AS1:2
5.1 RBPMS-AS1:2
5.2 RBPMS-AS1:2