Transcript: RCAN3AS:12

Basic information

LNCipedia transcript ID: RCAN3AS:12 
LNCipedia gene ID: RCAN3AS
RefSeq ID: NR_045409
Location (hg38): chr1:24496333-24502360
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 336 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_045409.1
Alternative gene names: RCAN3AS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -94.6619 non-coding 
CPAT coding probability 2.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RCAN3AS:12 yes no no no

Available literature

  1. Facchin (2011), Complexity of bidirectional transcription and alternative splicing at human RCAN3 locus., PLoS ONE
  2. Canaider (2010), Human RCAN3 gene expression and cell growth in endothelial cells., Int. J. Mol. Med.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 RCAN3AS:12
5.1 RCAN3AS:12
5.2 RCAN3AS:12