Transcript: SLC16A1-AS1:17

Basic information

LNCipedia transcript ID: SLC16A1-AS1:17 
HGNC Gene Symbol: SLC16A1-AS1    
HGNC Full Gene Name: SLC16A1 antisense RNA 1
Ensembl Gene ID: ENSG00000226419
Ensembl Transcript ID: ENST00000413231
Location (hg38): chr1:113008254-113047055
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 377 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000413231; ENST00000413231.1; RP11-389O22.1-001; OTTHUMT00000033546.1; NONHSAT005309; ENST00000413231.5
Alternative gene names: ENSG00000236066; RP11-389O22.1; ENSG00000236066.1; OTTHUMG00000012131.1; ENSG00000226419.7; SLC16A1-AS1; ; ENST00000421157.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -181.5564 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC16A1-AS1:17 no no no no

Available literature

  1. Zhai (2017), Expression pattern of genome-scale long noncoding RNA following acute myocardial infarction in Chinese Uyghur patients., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRIG2-2:1
3.1 lnc-LRIG2-2:1
4.0 SLC16A1-AS1:17
4.1 SLC16A1-AS1:17
5.0 SLC16A1-AS1:17
5.1 SLC16A1-AS1:17
5.2 SLC16A1-AS1:17