Transcript: SLC16A1-AS1:6

Basic information

LNCipedia transcript ID: SLC16A1-AS1:6 
HGNC Gene Symbol: SLC16A1-AS1    
HGNC Full Gene Name: SLC16A1 antisense RNA 1
Ensembl Gene ID: ENSG00000226419
Ensembl Transcript ID: ENST00000435800
Location (hg38): chr1:112956429-112999496
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1194 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT139882; ENST00000435800.2; ENST00000435800.6
Alternative gene names: ENSG00000226419.2; SLC16A1-AS1; ENSG00000226419.7; ; ENST00000421157.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.2112 non-coding 
CPAT coding probability 19.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC16A1-AS1:6 no no no no

Available literature

  1. Zhai (2017), Expression pattern of genome-scale long noncoding RNA following acute myocardial infarction in Chinese Uyghur patients., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRIG2-3:5
4.0 SLC16A1-AS1:6
4.1 SLC16A1-AS1:6
5.0 SLC16A1-AS1:6
5.1 SLC16A1-AS1:6
5.2 SLC16A1-AS1:6