Transcript: SMC5-AS1:1

Basic information

LNCipedia transcript ID: SMC5-AS1:1 
LNCipedia gene ID: SMC5-AS1
RefSeq ID: NR_039990
Location (hg38): chr9:70216059-70258874
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1039 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT131808; NR_039990; NR_039990.1
Alternative gene names: MAMDC2-AS2; SMC5-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.857 non-coding 
CPAT coding probability 1.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SMC5-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KLF9-3:1
4.0 SMC5-AS1:1
4.1 SMC5-AS1:1
5.0 SMC5-AS1:1
5.1 SMC5-AS1:1
5.2 SMC5-AS1:1