Transcript: SMC5-AS1:10

Basic information

LNCipedia transcript ID: SMC5-AS1:10 
LNCipedia gene ID: SMC5-AS1
Location (hg38): chr9:70219910-70258265
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 363 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000268364.1|FTMT23300023790.1
Alternative gene names: MAMDC2-AS2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -97.9021 non-coding 
CPAT coding probability 1.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SMC5-AS1:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SMC5-AS1:10
5.0 SMC5-AS1:10
5.1 SMC5-AS1:10
5.2 SMC5-AS1:10